VolumeFigureApi¶
- class VolumeFigureApi(api)[source]¶
Bases:
FigureApiAPI for working with
VolumeFigure.VolumeFigureApiobject is immutable.Methods
Add VolumeFigures to given Volume by ID.
Convert information about an entity to a dictionary.
Create new VolumeFigure for given slice in given volume ID.
Create figures in Supervisely in bulk.
Method returns a dictionary with pairs of volume ID and list of FigureInfo for the given dataset ID.
Asynchronously download figures for the given dataset ID.
Download figures for the given dataset ID.
Download figure geometries with given IDs from storage.
Download figure geometries with given IDs from storage asynchronously.
Download figure geometry with given ID from storage.
Download spatial figure geometries for the specified figure IDs and save them to the specified paths.
Download STL meshes for the specified figure IDs and saves them to the specified paths.
Checks if an entity with the given parent_id and name exists
Get Figures information by IDs from given dataset ID.
Generates a free name for an entity with the given parent_id and name.
Get Figure information by ID.
Get information about an entity by its name from the Supervisely server.
Get list of entities in parent entity with given parent ID.
Get list of all or limited quantity entities from the Supervisely server.
This generator function retrieves a list of all or a limited quantity of entities from the Supervisely server, yielding batches of entities as they are retrieved
Get the list of items for a given page number.
Yields list of images in dataset asynchronously page by page.
NamedTuple FigureInfo information about Figure.
Get string name of NamedTuple for class.
Interpolate a spatial figure with a ClosedSurfaceMesh geometry.
Download geometry of an existing in Supervisely figure and load this data into the VolumeFigure object to complete this figure representation.
Remove an entity with the specified ID from the Supervisely server.
Remove entities in batches from the Supervisely server.
Restore a single archived figure with the specified ID from the Supervisely server.
Restore archived figures in batches from the Supervisely server.
Update custom data for a specific figure in a volume.
Upload figure geometries with given figure IDs to storage.
Upload figure geometries with given figure IDs to storage asynchronously in batches.
Upload figure geometry with given figure ID to storage.
Upload geometries as bytes into spatial figures in the project using their UUID keys.
Upload spatial figures geometry as bytes to storage by given ID.
Upload existing interpolations or create on the fly and and add them to empty mesh figures.
Attributes
MAX_WAIT_ATTEMPTSMaximum number of attempts that will be made to wait for a certain condition to be met.
WAIT_ATTEMPT_TIMEOUT_SECNumber of seconds for intervals between attempts.
- InfoType¶
alias of
FigureInfo
- static info_sequence()¶
NamedTuple FigureInfo information about Figure.
- Example:
FigureInfo(id=588801373, updated_at='2020-12-22T06:37:13.183Z', created_at='2020-12-22T06:37:13.183Z', entity_id=186648101, object_id=112482, project_id=110366, dataset_id=419886, frame_index=0, geometry_type='bitmap', geometry={'bitmap': {'data': 'eJwdlns8...Cgj4=', 'origin': [335, 205]}})
- static info_tuple_name()¶
Get string name of NamedTuple for class.
- Returns:
NamedTuple name.
- Return type:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() tuple_name = api.video.figure.info_tuple_name() print(tuple_name) # FigureInfo
- append_bulk(volume_id, figures, key_id_map)[source]¶
Add VolumeFigures to given Volume by ID.
- Parameters:
- Returns:
None
- Return type:
None
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly from supervisely.volume_annotation.plane import Plane # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() project_id = 19370 volume_id = 19617444 key_id_map = sly.KeyIdMap() project_meta_json = api.project.get_meta(project_id) project_meta = sly.ProjectMeta.from_json(project_meta_json) vol_ann_json = api.volume.annotation.download(volume_id) vol_ann = sly.VolumeAnnotation.from_json(vol_ann_json, project_meta, key_id_map) volume_obj_collection = vol_ann.objects.to_json() vol_obj = sly.VolumeObject.from_json(volume_obj_collection[1], project_meta) figure = sly.VolumeFigure( vol_obj, sly.Rectangle(20, 20, 129, 200), sly.Plane.AXIAL, 45, ) api.volume.figure.append_bulk(volume_id, [figure], key_id_map)
-
create(volume_id, object_id, plane_name, slice_index, geometry_json, geometry_type, custom_data=
None)[source]¶ Create new VolumeFigure for given slice in given volume ID.
- Parameters:
- volume_id : int¶
Volume ID in Supervisely.
- object_id : int¶
ID of the object to which the VolumeFigure belongs.
- plane_name : str¶
Plane of the slice in volume.
- slice_index : int¶
Number of the slice to add
VolumeFigure.- geometry_json : dict¶
Parameters of geometry for
VolumeFigure.- geometry_type : str¶
Type of VolumeFigure geometry.
- Returns:
New figure ID
- Return type:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly from supervisely.volume_annotation.plane import Plane # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() volume_id = 19581134 object_id = 5565016 slice_index = 0 plane_name = Plane.AXIAL geometry_json = {'points': {'exterior': [[500, 500], [1555, 1500]], 'interior': []}} geometry_type = 'rectangle' figure_id = api.volume.figure.create( volume_id, object_id, plane_name, slice_index, geometry_json, geometry_type ) # 87821207
-
create_bulk(figures_json, entity_id=
None, dataset_id=None, batch_size=200)¶ Create figures in Supervisely in bulk. To optimize creation of a large number of figures use dataset ID instead of entity ID. In this case figure jsons list can contain figures from different entities for the same dataset. Every figure json must contain corresponding entity ID.
NOTE: Geometries for AlphaMask must be uploaded separately via
upload_geometries_batchmethod.
-
download(dataset_id, volume_ids=
None, skip_geometry=False, **kwargs)[source]¶ Method returns a dictionary with pairs of volume ID and list of FigureInfo for the given dataset ID. Can be filtered by volume IDs.
- Parameters:
- dataset_id : int¶
Dataset ID in Supervisely.
- volume_ids : List[int], optional¶
Specify the list of volume IDs within the given dataset ID. If volume_ids is None, the method returns all possible pairs of images with figures. Note: Consider using
sly.batched()to ensure that no figures are lost in the response.- skip_geometry : bool¶
Skip the download of figure geometry. May be useful for a significant api request speed increase in the large datasets.
- Returns:
A dictionary where keys are volume IDs and values are lists of figures.
- Return type:
Dict[int, List[
FigureInfo]]
-
async download_async(dataset_id, image_ids=
None, skip_geometry=False, filters=None, semaphore=None, log_progress=True, batch_size=300)¶ Asynchronously download figures for the given dataset ID. Can be filtered by image IDs. This method is significantly faster than the synchronous version for large datasets.
- Parameters:
- dataset_id : int¶
Dataset ID in Supervisely.
- image_ids : List[int], optional¶
Specify the list of image IDs within the given dataset ID. If image_ids is None, the method returns all possible pairs of images with figures.
- skip_geometry : bool¶
Skip the download of figure geometry. May be useful for a significant api request speed increase in the large datasets.
- filters : List[Dict[str, Any]], optional¶
Filters for the figures. See https://api.docs.supervisely.com/#tag/Figures/paths/~1figures.list/get for more details.
- semaphore : Optional[asyncio.Semaphore], optional¶
Semaphore to limit the number of concurrent downloads.
- log_progress : bool, optional¶
If True, log the progress of the download.
- batch_size : int, optional¶
Size of the batch for downloading figures per 1 request. Default is 300. Used for batching image_ids when filtering by specific images. Adjust this value for optimal performance, value cannot exceed 500.
- Returns:
A dictionary where keys are image IDs and values are lists of figures.
- Return type:
Dict[int, List[
FigureInfo]]- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() dataset_id = 40568 image_id = 4877489 download_coroutine = api.image.figure.download_async(dataset_id, [image_id]) figures = sly.run_coroutine(download_coroutine) filtered_figures = sly.run_coroutine( api.image.figure.download_async( dataset_id, [image_id], filters=[ { "type": "objects_class", "data": { "from": 1, "to": 9999, "include": True, "classId": 154344, }, } ], ) )
-
download_fast(dataset_id, image_ids=
None, skip_geometry=False, filters=None, semaphore=None, log_progress=True, batch_size=300)¶ Download figures for the given dataset ID. Can be filtered by image IDs. This method is significantly faster than the synchronous version for large datasets and is designed to be used in an asynchronous context. Will fallback to the synchronous version if async fails.
- Parameters:
- dataset_id : int¶
Dataset ID in Supervisely.
- image_ids : List[int], optional¶
Specify the list of image IDs within the given dataset ID. If image_ids is None, the method returns all possible pairs of images with figures.
- skip_geometry : bool¶
Skip the download of figure geometry. May be useful for a significant api request speed increase in the large datasets.
- filters : List[Dict[str, Any]], optional¶
Filters for the figures. See https://api.docs.supervisely.com/#tag/Figures/paths/~1figures.list/get for more details.
- semaphore : Optional[asyncio.Semaphore], optional¶
Semaphore to limit the number of concurrent downloads.
- log_progress : bool, optional¶
If True, log the progress of the download.
- batch_size : int, optional¶
Size of the batch for downloading figures per 1 request. Default is 300. Used for batching image_ids when filtering by specific images. Adjust this value for optimal performance, value cannot exceed 500.
- Returns:
A dictionary where keys are image IDs and values are lists of figures.
- Return type:
Dict[int, List[
FigureInfo]]- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() dataset_id = 40568 image_id = 4877489 figures = api.image.figure.download_fast(dataset_id, [image_id]) filtered_figures = api.image.figure.download_fast( dataset_id, [image_id], filters=[ { "type": "objects_class", "data": { "from": 1, "to": 9999, "include": True, "classId": 154344, }, } ], )
-
download_geometries_batch(ids, progress_cb=
None)¶ Download figure geometries with given IDs from storage.
-
async download_geometries_batch_async(ids, progress_cb=
None, semaphore=None)¶ Download figure geometries with given IDs from storage asynchronously.
- Parameters:
- ids : List[int]¶
List of figure IDs in Supervisely.
- progress_cb : Union[tqdm, Callable], optional¶
Progress bar to show the download progress. Shows the number of bytes downloaded.
- semaphore : Optional[asyncio.Semaphore], optional¶
Semaphore to limit the number of concurrent downloads.
- Returns:
List of figure geometries in Supervisely JSON format.
- Return type:
List[dict]
- Usage Example:
import os import asyncio from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() figure_ids = [642155547, 642155548, 642155549] loop = sly.utils.get_or_create_event_loop() geometries = loop.run_until_complete( api.figure.download_geometries_batch_async( figure_ids, progress_cb=tqdm(total=len(figure_ids), desc="Downloading geometries"), semaphore=asyncio.Semaphore(15), ) )
- download_sf_geometries(ids, paths)[source]¶
Download spatial figure geometries for the specified figure IDs and save them to the specified paths.
- Parameters:
- Returns:
None
- Return type:
None
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() STORAGE_DIR = sly.app.get_data_dir() volume_id = 19371414 project_id = 17215 volume = api.volume.get_info_by_id(volume_id) key_id_map = sly.KeyIdMap() project_meta_json = api.project.get_meta(project_id) project_meta = sly.ProjectMeta.from_json(project_meta_json) vol_ann_json = api.volume.annotation.download(volume_id) id_to_paths = {} vol_ann = sly.VolumeAnnotation.from_json(vol_ann_json, project_meta, key_id_map) for sp_figure in vol_ann.spatial_figures: figure_id = key_id_map.get_figure_id(sp_figure.key()) id_to_paths[figure_id] = f"{STORAGE_DIR}/{sp_figure.key().hex}.stl" if id_to_paths: api.volume.figure.download_sf_geometries(*zip(*id_to_paths.items()))
- download_stl_meshes(ids, paths)[source]¶
Download STL meshes for the specified figure IDs and saves them to the specified paths.
- Parameters:
- Returns:
None
- Return type:
None
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() STORAGE_DIR = sly.app.get_data_dir() volume_id = 19371414 project_id = 17215 volume = api.volume.get_info_by_id(volume_id) key_id_map = sly.KeyIdMap() project_meta_json = api.project.get_meta(project_id) project_meta = sly.ProjectMeta.from_json(project_meta_json) vol_ann_json = api.volume.annotation.download(volume_id) id_to_paths = {} vol_ann = sly.VolumeAnnotation.from_json(vol_ann_json, project_meta, key_id_map) for sp_figure in vol_ann.spatial_figures: figure_id = key_id_map.get_figure_id(sp_figure.key()) id_to_paths[figure_id] = f"{STORAGE_DIR}/{sp_figure.key().hex}.stl" if id_to_paths: api.volume.figure.download_stl_meshes(*zip(*id_to_paths.items()))
- exists(parent_id, name)¶
Checks if an entity with the given parent_id and name exists
- Parameters:
- Returns:
Returns True if entity exists, and False if not
- Return type:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() name = "IMG_0315.jpeg" dataset_id = 55832 exists = api.image.exists(dataset_id, name) print(exists) # True
- get_by_ids(dataset_id, ids)¶
Get Figures information by IDs from given dataset ID.
- Parameters:
- Returns:
List of information about Figures.
- Return type:
List[
FigureInfo]- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() dataset_id = 466642 figures_ids = [642155547, 642155548, 642155549] figures_infos = api.video.figure.get_by_ids(dataset_id, figures_ids) print(figures_infos) # Output: [ # [ # 642155547, # "2021-03-23T13:25:34.705Z", # "2021-03-23T13:25:34.705Z", # 198703211, # 152118, # 124976, # 466642, # 0, # "rectangle", # { # "points": { # "exterior": [ # [ # 2240, # 1041 # ], # [ # 2463, # 1187 # ] # ], # "interior": [] # } # } # ], # [ # 642155548, # "2021-03-23T13:25:34.705Z", # "2021-03-23T13:25:34.705Z", # 198703211, # 152118, # 124976, # 466642, # 1, # "rectangle", # { # "points": { # "exterior": [ # [ # 2248, # 1048 # ], # [ # 2455, # 1176 # ] # ], # "interior": [] # } # } # ], # [ # 642155549, # "2021-03-23T13:25:34.705Z", # "2021-03-23T13:25:34.705Z", # 198703211, # 152118, # 124976, # 466642, # 2, # "rectangle", # { # "points": { # "exterior": [ # [ # 2237, # 1046 # ], # [ # 2464, # 1179 # ] # ], # "interior": [] # } # } # ] # ]
- get_free_name(parent_id, name)¶
Generates a free name for an entity with the given parent_id and name. Adds an increasing suffix to original name until a unique name is found.
- Parameters:
- Returns:
Returns free name.
- Return type:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() name = "IMG_0315.jpeg" dataset_id = 55832 free_name = api.image.get_free_name(dataset_id, name) print(free_name) # IMG_0315_001.jpeg
- get_info_by_id(id)¶
Get Figure information by ID.
- Parameters:
- Returns:
Information about Figure.
- Return type:
FigureInfo- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() figure_id = 588801373 figure_info = api.video.figure.get_info_by_id(figure_id) print(figure_info) # Output: [ # 588801373, # "2020-12-22T06:37:13.183Z", # "2020-12-22T06:37:13.183Z", # 186648101, # 112482, # 110366, # 419886, # 0, # "bitmap", # { # "bitmap": { # "data": "eJw...Cgj4=", # "origin": [ # 335, # 205 # ] # } # } # ]
-
get_info_by_name(parent_id, name, fields=
[])¶ Get information about an entity by its name from the Supervisely server.
- Parameters:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() dataset_id = 55832 name = "IMG_0315.jpeg" info = api.image.get_info_by_name(dataset_id, name) print(info) # Output: ImageInfo(id=19369643, name='IMG_0315.jpeg', ...)
-
get_list(parent_id, filters=
None)¶ Get list of entities in parent entity with given parent ID.
- Parameters:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() dataset_id = 55832 images = api.image.get_list(dataset_id) print(images) # Output: [ ImageInfo(id=19369642, ...) ImageInfo(id=19369643, ...) ImageInfo(id=19369644, ...) ]
-
get_list_all_pages(method, data, progress_cb=
None, convert_json_info_cb=None, limit=None, return_first_response=False)¶ Get list of all or limited quantity entities from the Supervisely server.
- Parameters:
- method : str¶
Request method name
- data : dict¶
Dictionary with request body info
- progress_cb : Progress, optional¶
Function for tracking download progress.
- convert_json_info_cb : Callable, optional¶
Function for convert json info
- limit : int, optional¶
Number of entity to retrieve
- return_first_response : bool, optional¶
Specify if return first response
- Returns:
List of entities.
- Return type:
List[dict]
-
get_list_all_pages_generator(method, data, progress_cb=
None, convert_json_info_cb=None, limit=None, return_first_response=False)¶ This generator function retrieves a list of all or a limited quantity of entities from the Supervisely server, yielding batches of entities as they are retrieved
- Parameters:
- method : str¶
Request method name
- data : dict¶
Dictionary with request body info
- progress_cb : Progress, optional¶
Function for tracking download progress.
- convert_json_info_cb : Callable, optional¶
Function for convert json info
- limit : int, optional¶
Number of entity to retrieve
- return_first_response : bool, optional¶
Specify if return first response
- async get_list_idx_page_async(method, data)¶
Get the list of items for a given page number. Page number is specified in the data dictionary.
-
async get_list_page_generator_async(method, data, pages_count=
None, semaphore=None)¶ Yields list of images in dataset asynchronously page by page.
- Parameters:
- method : str¶
Method to call for listing items.
- data : dict¶
Data to pass to the API method.
- pages_count : int, optional¶
Preferred number of pages to retrieve if used with a
per_pagelimit. Will be automatically adjusted if thepagesCountdiffers from the requested number.- semaphore=
None¶ Semaphore for limiting the number of simultaneous requests.
- Returns:
List of images in dataset.
- Return type:
AsyncGenerator[List[
ImageInfo]]- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() method = 'images.list' data = {'datasetId': 123456} loop = sly.utils.get_or_create_event_loop() images = loop.run_until_complete(api.image.get_list_generator_async(method, data))
- interpolate(volume_id, spatial_figure, key_id_map)[source]¶
Interpolate a spatial figure with a ClosedSurfaceMesh geometry.
- Parameters:
- Returns:
None
- Return type:
None
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() volume_id = 19371414 project_id = 17215 volume = api.volume.get_info_by_id(volume_id) key_id_map = sly.KeyIdMap() project_meta_json = api.project.get_meta(project_id) project_meta = sly.ProjectMeta.from_json(project_meta_json) vol_ann_json = api.volume.annotation.download(volume_id) id_to_paths = {} vol_ann = sly.VolumeAnnotation.from_json(vol_ann_json, project_meta, key_id_map) for sp_figure in vol_ann.spatial_figures: res = volume_figure_api.interpolate(volume_id, sp_figure, key_id_map)
- load_sf_geometry(spatial_figure, key_id_map)[source]¶
Download geometry of an existing in Supervisely figure and load this data into the VolumeFigure object to complete this figure representation.
- Parameters:
- spatial_figure¶
The spatial figure object from
VolumeAnnotation.- key_id_map : KeyIdMap object¶
The mapped keys and IDs.
- remove(id)¶
Remove an entity with the specified ID from the Supervisely server.
- Parameters:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() image_id = 19369643 api.image.remove(image_id)
-
remove_batch(ids, progress_cb=
None, batch_size=50)¶ Remove entities in batches from the Supervisely server. All entity IDs must belong to the same nesting (for example team, or workspace, or project, or dataset). Therefore, it is necessary to sort IDs before calling this method.
- Parameters:
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() image_ids = [19369645, 19369646, 19369647] api.image.remove_batch(image_ids)
-
restore_batch(ids, progress_cb=
None, batch_size=50)¶ Restore archived figures in batches from the Supervisely server.
-
update_custom_data(figure_id, custom_data, update_strategy=
'merge')[source]¶ Update custom data for a specific figure in a volume.
- upload_geometries_batch(figure_ids, geometries)¶
Upload figure geometries with given figure IDs to storage.
-
async upload_geometries_batch_async(figure_ids, geometries, semaphore=
None, progress_cb=None)¶ Upload figure geometries with given figure IDs to storage asynchronously in batches.
- Parameters:
- figure_ids : List[int]¶
List of figure IDs in Supervisely.
- geometries : List[dict]¶
List of figure geometries in Supervisely JSON format.
- semaphore : Optional[asyncio.Semaphore], optional¶
Semaphore to limit the number of concurrent uploads.
- progress_cb : Union[tqdm, Callable], optional¶
Progress bar to show the upload progress. Shows the number of geometries uploaded.
- Returns:
None
- Return type:
None
- Usage Example:
import os import asyncio from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() figure_ids = [642155547, 642155548, 642155549] geometries = [{...}, {...}, {...}] # Your geometry data upload_coroutine = api.figure.upload_geometries_batch_async( figure_ids, geometries, semaphore=asyncio.Semaphore(10), ) sly.run_coroutine(upload_coroutine)
- upload_sf_geometries(spatial_figures, geometries, key_id_map)[source]¶
Upload geometries as bytes into spatial figures in the project using their UUID keys.
- Parameters:
- Returns:
None
- Return type:
None
- Usage Example:
import os import numpy as np from dotenv import load_dotenv import supervisely as sly from supervisely.volume.nrrd_encoder import encode # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() volume_id = 23772225 project_id = 28159 geometries = {} key_id_map = sly.KeyIdMap() geometry_bytes = encode(np.random.randint(2, size=(20, 20, 20), dtype=np.uint8)) vol_ann_json = api.volume.annotation.download(volume_id) project_meta = sly.ProjectMeta.from_json(api.project.get_meta(project_id)) ann = sly.VolumeAnnotation.from_json(vol_ann_json, project_meta, key_id_map) spatial_figures = [sp_figure.key() for sp_figure in ann.spatial_figures] for figure in spatial_figures: geometries[figure] = geometry_bytes api.volume.figure.upload_sf_geometries(spatial_figures, geometries, key_id_map)
- upload_sf_geometry(spatial_figures, geometries, key_id_map)[source]¶
Upload spatial figures geometry as bytes to storage by given ID.
-
upload_stl_meshes(volume_id, spatial_figures, key_id_map, interpolation_dir=
None)[source]¶ Upload existing interpolations or create on the fly and and add them to empty mesh figures.
- Parameters:
- Returns:
None
- Return type:
None
- Usage Example:
import os from dotenv import load_dotenv import supervisely as sly # Load secrets and create API object from .env file (recommended) # Learn more here: https://developer.supervisely.com/getting-started/basics-of-authentication if sly.is_development(): load_dotenv(os.path.expanduser("~/supervisely.env")) api = sly.Api.from_env() volume_id = 19371414 project_id = 17215 volume = api.volume.get_info_by_id(volume_id) key_id_map = sly.KeyIdMap() project_meta_json = api.project.get_meta(project_id) project_meta = sly.ProjectMeta.from_json(project_meta_json) vol_ann_json = api.volume.annotation.download(volume_id) id_to_paths = {} vol_ann = sly.VolumeAnnotation.from_json(vol_ann_json, project_meta, key_id_map) sp_figures = vol_ann.spatial_figures res = volume_figure_api.upload_stl_meshes(volume_id, sp_figures, key_id_map)